J4_11IQ_004

3D structure

PDB id

11IQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,eIF5A and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

11IQ|1|28|C|216, 11IQ|1|28|C|217, 11IQ|1|28|A|218, 11IQ|1|28|G|219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

11IQ|1|28|C|196
11IQ|1|28|A|197
11IQ|1|28|A|198
11IQ|1|28|G|199
*
11IQ|1|28|C|215
11IQ|1|28|C|216
11IQ|1|28|C|217
11IQ|1|28|A|218
11IQ|1|28|G|219
11IQ|1|28|C|220
11IQ|1|28|C|221
11IQ|1|28|C|222
*
11IQ|1|28|G|226
11IQ|1|28|A|227
11IQ|1|28|C|228
*
11IQ|1|28|G|240
11IQ|1|28|G|241
11IQ|1|28|U|242
11IQ|1|28|A|243
11IQ|1|28|G|244

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 26

60S ribosomal protein L26

Chain L4

60S ribosomal protein L4