J4_11IQ_009
3D structure
- PDB id
- 11IQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with eEF2,eIF5A and SERBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 11IQ|1|28|U|3818
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_11IQ_009 not in the Motif Atlas
- Homologous match to J4_8GLP_010
- Geometric discrepancy: 0.2245
- The information below is about J4_8GLP_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_21738.1
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tSW-F-cSH-F-F
- Number of instances in this motif group
- 2
Unit IDs
11IQ|1|28|C|3696
11IQ|1|28|U|3697
11IQ|1|28|G|3698
*
11IQ|1|28|C|3752
11IQ|1|28|G|3753
*
11IQ|1|28|C|3771
11IQ|1|28|U|3772
11IQ|1|28|U|3773
11IQ|1|28|A|3774
11IQ|1|28|A|3775
11IQ|1|28|G|3776
11IQ|1|28|G|3777
11IQ|1|28|U|3778
11IQ|1|28|A|3779
11IQ|1|28|G|3780
*
11IQ|1|28|U|3814
11IQ|1|28|G|3815
11IQ|1|28|A|3816
11IQ|1|28|A|3817
11IQ|1|28|U|3818
11IQ|1|28|G|3819
Current chains
- Chain 28
- 28S rRNA
Nearby chains
- Chain 18
- Small subunit ribosomal RNA; SSU rRNA
- Chain 41
- eL41
- Chain B
- Eukaryotic translation initiation factor 5A-1
- Chain L8
- 60S ribosomal protein L8
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