J4_11IQ_011
3D structure
- PDB id
- 11IQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with eEF2,eIF5A and SERBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- CUAAG*UUGAU*ACC*GGG
- Length
- 16 nucleotides
- Bulged bases
- 11IQ|1|28|A|4234
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_11IQ_011 not in the Motif Atlas
- Homologous match to J4_9H3G_010
- Geometric discrepancy: 0.1515
- The information below is about J4_9H3G_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_59590.3
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-F-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
11IQ|1|28|C|4231
11IQ|1|28|U|4232
11IQ|1|28|A|4233
11IQ|1|28|A|4234
11IQ|1|28|G|4235
*
11IQ|1|28|U|4289
11IQ|1|28|U|4290
11IQ|1|28|G|4291
11IQ|1|28|A|4292
11IQ|1|28|U|4293
*
11IQ|1|28|A|4317
11IQ|1|28|C|4318
11IQ|1|28|C|4319
*
11IQ|1|28|G|4328
11IQ|1|28|G|4329
11IQ|1|28|G|4330
Current chains
- Chain 28
- 28S rRNA
Nearby chains
- Chain 21
- 60S ribosomal protein L21
- Chain 29
- Large ribosomal subunit protein eL29
- Chain 42
- eL42
- Chain L5
- 60S ribosomal protein L5
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