Loop J4_11JJ

3D structure

PDB id: 11JJ (explore in PDB, NAKB, or RNA 3D Hub)
Description: Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å

Loop

Sequence: CUUGUCUCAAA*UGACGAAAAAUAAC*GGAAUGAGUCCACUUUAAAUCCUUUAACGAGGAUCCAU*AUAG
Length: 67 nucleotides
Bulged bases: None detected
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

11JJ|1|18|C|30
11JJ|1|18|U|31
11JJ|1|18|U|32
11JJ|1|18|G|33
11JJ|1|18|U|34
11JJ|1|18|C|35
11JJ|1|18|U|36
11JJ|1|18|C|37
11JJ|1|18|A|38
11JJ|1|18|A|39
11JJ|1|18|A|40
*
11JJ|1|18|U|514
11JJ|1|18|G|515
11JJ|1|18|A|516
11JJ|1|18|C|517
11JJ|1|18|G|518
11JJ|1|18|A|519
11JJ|1|18|A|520
11JJ|1|18|A|521
11JJ|1|18|A|522
11JJ|1|18|A|523
11JJ|1|18|U|524
11JJ|1|18|A|525
11JJ|1|18|A|526
11JJ|1|18|C|527
*
11JJ|1|18|G|558
11JJ|1|18|G|559
11JJ|1|18|A|560
11JJ|1|18|A|561
11JJ|1|18|U|562
11JJ|1|18|G|563
11JJ|1|18|A|564
11JJ|1|18|G|565
11JJ|1|18|U|566
11JJ|1|18|C|567
11JJ|1|18|C|568
11JJ|1|18|A|569
11JJ|1|18|C|570
11JJ|1|18|U|571
11JJ|1|18|U|572
11JJ|1|18|U|573
11JJ|1|18|A|574
11JJ|1|18|A|575
11JJ|1|18|A|576
11JJ|1|18|U|577
11JJ|1|18|C|578
11JJ|1|18|C|579
11JJ|1|18|U|580
11JJ|1|18|U|581
11JJ|1|18|U|582
11JJ|1|18|A|583
11JJ|1|18|A|584
11JJ|1|18|C|585
11JJ|1|18|G|586
11JJ|1|18|A|587
11JJ|1|18|G|588
11JJ|1|18|G|589
11JJ|1|18|A|590
11JJ|1|18|U|591
11JJ|1|18|C|592
11JJ|1|18|C|593
11JJ|1|18|A|594
11JJ|1|18|U|595
*
11JJ|1|18|A|641
11JJ|1|18|U|642
11JJ|1|18|A|643
11JJ|1|18|G|644

Current chains

Chain 18: 18S rRNA

Nearby chains

Chain RR: 40S ribosomal protein S23
Chain S4: 40S ribosomal protein S4
Chain S9: 40S ribosomal protein S9
Chain SS: 40S ribosomal protein S24
Chain YY: 40S ribosomal protein S30

J4_11JJ_001