J4_11JJ_004
3D structure
- PDB id
- 11JJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CC*GAGUCG*CAAAGCG*UAAG
- Length
- 19 nucleotides
- Bulged bases
- 11JJ|1|28|C|309
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_11JJ_004 not in the Motif Atlas
- Homologous match to J4_8GLP_001
- Geometric discrepancy: 0.061
- The information below is about J4_8GLP_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_94698.4
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW
- Number of instances in this motif group
- 12
Unit IDs
11JJ|1|28|C|111
11JJ|1|28|C|112
*
11JJ|1|28|G|278
11JJ|1|28|A|279
11JJ|1|28|G|280
11JJ|1|28|U|281
11JJ|1|28|C|282
11JJ|1|28|G|283
*
11JJ|1|28|C|304
11JJ|1|28|A|305
11JJ|1|28|A|306
11JJ|1|28|A|307
11JJ|1|28|G|308
11JJ|1|28|C|309
11JJ|1|28|G|310
*
11JJ|1|28|U|327
11JJ|1|28|A|328
11JJ|1|28|A|329
11JJ|1|28|G|330
Current chains
- Chain 28
- 28S rRNA
Nearby chains
- Chain 13
- Large ribosomal subunit protein eL13
- Chain 15
- 60S ribosomal protein L15
- Chain 35
- 60S ribosomal protein L35
- Chain 36
- 60S ribosomal protein L36
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