J4_11JJ_005

3D structure

PDB id

11JJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

11JJ|1|28|C|216, 11JJ|1|28|C|217, 11JJ|1|28|A|218, 11JJ|1|28|G|219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

11JJ|1|28|C|196
11JJ|1|28|A|197
11JJ|1|28|A|198
11JJ|1|28|G|199
*
11JJ|1|28|C|215
11JJ|1|28|C|216
11JJ|1|28|C|217
11JJ|1|28|A|218
11JJ|1|28|G|219
11JJ|1|28|C|220
11JJ|1|28|C|221
11JJ|1|28|C|222
*
11JJ|1|28|G|226
11JJ|1|28|A|227
11JJ|1|28|C|228
*
11JJ|1|28|G|240
11JJ|1|28|G|241
11JJ|1|28|U|242
11JJ|1|28|A|243
11JJ|1|28|G|244

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 26

60S ribosomal protein L26

Chain L4

60S ribosomal protein L4