J4_11JJ_011
3D structure
- PDB id
- 11JJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 11JJ|1|28|U|3818
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_11JJ_011 not in the Motif Atlas
- Homologous match to J4_8GLP_010
- Geometric discrepancy: 0.098
- The information below is about J4_8GLP_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_21738.1
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tSW-F-cSH-F-F
- Number of instances in this motif group
- 2
Unit IDs
11JJ|1|28|C|3696
11JJ|1|28|U|3697
11JJ|1|28|G|3698
*
11JJ|1|28|C|3752
11JJ|1|28|G|3753
*
11JJ|1|28|C|3771
11JJ|1|28|U|3772
11JJ|1|28|U|3773
11JJ|1|28|A|3774
11JJ|1|28|A|3775
11JJ|1|28|G|3776
11JJ|1|28|G|3777
11JJ|1|28|U|3778
11JJ|1|28|A|3779
11JJ|1|28|G|3780
*
11JJ|1|28|U|3814
11JJ|1|28|G|3815
11JJ|1|28|A|3816
11JJ|1|28|A|3817
11JJ|1|28|U|3818
11JJ|1|28|G|3819
Current chains
- Chain 28
- 28S rRNA
Nearby chains
- Chain 18
- Small subunit ribosomal RNA; SSU rRNA
- Chain 41
- eL41
- Chain IF
- IFRD2
- Chain L8
- 60S ribosomal protein L8
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