J4_11KH_002

3D structure

PDB id

11KH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AAG*CGAAAG*CCAUAAACGAUG*UU

Length

23 nucleotides

Bulged bases

11KH|1|18|A|672, 11KH|1|18|A|1083, 11KH|1|18|C|1085, 11KH|1|18|A|1087

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_11KH_002 not in the Motif Atlas

Homologous match to J4_9PN5_011

Geometric discrepancy: 0.0915

The information below is about J4_9PN5_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_14595.4

Basepair signature

cWW-cWW-cWW-F-F-tHW-F-F-F-F-cWW-F

Number of instances in this motif group

7

Unit IDs

11KH|1|18|A|671
11KH|1|18|A|672
11KH|1|18|G|673
*
11KH|1|18|C|1032
11KH|1|18|G|1033
11KH|1|18|A|1034
11KH|1|18|A|1035
11KH|1|18|A|1036
11KH|1|18|G|1037
*
11KH|1|18|C|1078
11KH|1|18|C|1079
11KH|1|18|A|1080
11KH|1|18|U|1081
11KH|1|18|A|1082
11KH|1|18|A|1083
11KH|1|18|A|1084
11KH|1|18|C|1085
11KH|1|18|G|1086
11KH|1|18|A|1087
11KH|1|18|U|1088
11KH|1|18|G|1089
*
11KH|1|18|U|1160
11KH|1|18|U|1161

Current chains

Chain 18

18S rRNA

Nearby chains

Chain 28

Large subunit ribosomal RNA; LSU rRNA

Chain 41

eL41

Chain DD

Small ribosomal subunit protein uS17

Chain FF

40S ribosomal protein S13

Chain GG

Small ribosomal subunit protein uS11

Chain RR

40S ribosomal protein S23

Chain UU

eS26

Chain WX

40S ribosomal protein S15a

Chain ff

60S ribosomal protein L37a