J4_11KH_006

3D structure

PDB id

11KH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

11KH|1|28|A|2366, 11KH|1|28|U|2369, 11KH|1|28|U|2828

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_11KH_006 not in the Motif Atlas

Homologous match to J4_8GLP_004

Geometric discrepancy: 0.0722

The information below is about J4_8GLP_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

11KH|1|28|C|2365
11KH|1|28|A|2366
11KH|1|28|A|2367
11KH|1|28|A|2368
11KH|1|28|U|2369
11KH|1|28|A|2370
11KH|1|28|U|2371
*
11KH|1|28|A|2389
11KH|1|28|G|2390
11KH|1|28|G|2391
*
11KH|1|28|C|2824
11KH|1|28|A|2825
11KH|1|28|U|2826
11KH|1|28|G|2827
11KH|1|28|U|2828
11KH|1|28|U|2829
*
11KH|1|28|A|3856
11KH|1|28|G|3857

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 17

60S ribosomal protein L17

Chain 19

60S ribosomal protein L19

Chain 31

60S ribosomal protein L31