J4_12DP_013
3D structure
- PDB id
- 12DP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with sparsomycin, mRNA, and aminoacylated initiator P-site fMet-tRNAmet at 2.95A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- GGG*CGAAAG*CCCUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 12DP|1|1a|A|815
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_12DP_013 not in the Motif Atlas
- Homologous match to J4_8B0X_003
- Geometric discrepancy: 0.0886
- The information below is about J4_8B0X_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_14595.4
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-cWW-F
- Number of instances in this motif group
- 7
Unit IDs
12DP|1|1a|G|575
12DP|1|1a|G|576
12DP|1|1a|G|577
*
12DP|1|1a|C|764
12DP|1|1a|G|765
12DP|1|1a|A|766
12DP|1|1a|A|767
12DP|1|1a|A|768
12DP|1|1a|G|769
*
12DP|1|1a|C|810
12DP|1|1a|C|811
12DP|1|1a|C|812
12DP|1|1a|U|813
12DP|1|1a|A|814
12DP|1|1a|A|815
12DP|1|1a|A|816
12DP|1|1a|C|817
12DP|1|1a|G|818
12DP|1|1a|A|819
12DP|1|1a|U|820
12DP|1|1a|G|821
*
12DP|1|1a|C|879
12DP|1|1a|C|880
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 1h
- 30S ribosomal protein S8
- Chain 1l
- 30S ribosomal protein S12
- Chain 1o
- 30S ribosomal protein S15
- Chain 1q
- 30S ribosomal protein S17
Coloring options: