3D structure

PDB id
8B0X (explore in PDB, NAKB, or RNA 3D Hub)
Description
Translating 70S ribosome in the unrotated state (P and E, tRNAs)
Experimental method
ELECTRON MICROSCOPY
Resolution
1.55 Å

Loop

Sequence
GCG*CGAAAG*CCGUAAACGAUG*CC
Length
23 nucleotides
Bulged bases
8B0X|1|A|C|576, 8B0X|1|A|A|815
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_8B0X_003 not in the Motif Atlas
Homologous match to J4_5J7L_003
Geometric discrepancy: 0.05
The information below is about J4_5J7L_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_61885.6
Basepair signature
cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
Number of instances in this motif group
4

Unit IDs

8B0X|1|A|G|575
8B0X|1|A|C|576
8B0X|1|A|G|577
*
8B0X|1|A|C|764
8B0X|1|A|G|765
8B0X|1|A|A|766
8B0X|1|A|A|767
8B0X|1|A|A|768
8B0X|1|A|G|769
*
8B0X|1|A|C|810
8B0X|1|A|C|811
8B0X|1|A|G|812
8B0X|1|A|U|813
8B0X|1|A|A|814
8B0X|1|A|A|815
8B0X|1|A|A|816
8B0X|1|A|C|817
8B0X|1|A|G|818
8B0X|1|A|A|819
8B0X|1|A|U|820
8B0X|1|A|G|821
*
8B0X|1|A|C|879
8B0X|1|A|C|880

Current chains

Chain A
16S rRNA

Nearby chains

Chain H
30S ribosomal protein S8
Chain L
30S ribosomal protein S12
Chain O
30S ribosomal protein S15
Chain Q
30S ribosomal protein S17
Chain U
30S ribosomal protein S21
Chain a
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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