J4_12DP_019

3D structure

PDB id

12DP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with sparsomycin, mRNA, and aminoacylated initiator P-site fMet-tRNAmet at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

UC*GGUUAG*CU*ACCCGUA

Length

17 nucleotides

Bulged bases

12DP|1|2A|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_12DP_019 not in the Motif Atlas

Homologous match to J4_7A0S_006

Geometric discrepancy: 0.1536

The information below is about J4_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_48150.2

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

9

Unit IDs

12DP|1|2A|U|1313
12DP|1|2A|C|1314
*
12DP|1|2A|G|1338
12DP|1|2A|G|1339
12DP|1|2A|U|1340
12DP|1|2A|U|1341
12DP|1|2A|A|1342
12DP|1|2A|G|1343
*
12DP|1|2A|C|1404
12DP|1|2A|U|1405
*
12DP|1|2A|A|1597
12DP|1|2A|C|1598
12DP|1|2A|C|1599
12DP|1|2A|C|1600
12DP|1|2A|G|1601
12DP|1|2A|U|1602
12DP|1|2A|A|1603

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2X

50S ribosomal protein L23