J4_12DP_021
3D structure
- PDB id
- 12DP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with sparsomycin, mRNA, and aminoacylated initiator P-site fMet-tRNAmet at 2.95A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- GACUG*CACAG*CGAC*GUAAC
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_12DP_021 not in the Motif Atlas
- Homologous match to J4_8B0X_011
- Geometric discrepancy: 0.0629
- The information below is about J4_8B0X_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61477.6
- Basepair signature
- cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
12DP|1|2A|G|1772
12DP|1|2A|A|1773
12DP|1|2A|C|1774
12DP|1|2A|U|1775
12DP|1|2A|G|1776
*
12DP|1|2A|C|1788
12DP|1|2A|A|1789
12DP|1|2A|C|1790
12DP|1|2A|A|1791
12DP|1|2A|G|1792
*
12DP|1|2A|C|1827
12DP|1|2A|G|1828
12DP|1|2A|A|1829
12DP|1|2A|C|1830
*
12DP|1|2A|G|1975
12DP|1|2A|U|1976
12DP|1|2A|A|1977
12DP|1|2A|A|1978
12DP|1|2A|C|1979
Current chains
- Chain 2A
- 23S Ribosomal RNA
Nearby chains
- Chain 2D
- 50S ribosomal protein L2
- Chain 2a
- Small subunit ribosomal RNA; SSU rRNA
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