J4_8B0X_011

3D structure

PDB id

8B0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 70S ribosome in the unrotated state (P and E, tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.55 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8B0X_011 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0317

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8B0X|1|a|A|1774
8B0X|1|a|A|1775
8B0X|1|a|C|1776
8B0X|1|a|U|1777
8B0X|1|a|G|1778
*
8B0X|1|a|C|1790
8B0X|1|a|A|1791
8B0X|1|a|C|1792
8B0X|1|a|A|1793
8B0X|1|a|G|1794
*
8B0X|1|a|U|1829
8B0X|1|a|G|1830
8B0X|1|a|A|1831
8B0X|1|a|C|1832
*
8B0X|1|a|G|1979
8B0X|1|a|U|1980
8B0X|1|a|A|1981
8B0X|1|a|A|1982
8B0X|1|a|U|1983

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain c

50S ribosomal protein L2