J4_12DP_027

3D structure

PDB id

12DP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with sparsomycin, mRNA, and aminoacylated initiator P-site fMet-tRNAmet at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GGG*CGAAAG*CCCUAAACGAUG*CC

Length

23 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_12DP_027 not in the Motif Atlas

Homologous match to J4_8B0X_003

Geometric discrepancy: 0.1033

The information below is about J4_8B0X_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_14595.4

Basepair signature

cWW-cWW-cWW-F-F-tHW-F-F-F-F-cWW-F

Number of instances in this motif group

7

Unit IDs

12DP|1|2a|G|575
12DP|1|2a|G|576
12DP|1|2a|G|577
*
12DP|1|2a|C|764
12DP|1|2a|G|765
12DP|1|2a|A|766
12DP|1|2a|A|767
12DP|1|2a|A|768
12DP|1|2a|G|769
*
12DP|1|2a|C|810
12DP|1|2a|C|811
12DP|1|2a|C|812
12DP|1|2a|U|813
12DP|1|2a|A|814
12DP|1|2a|A|815
12DP|1|2a|A|816
12DP|1|2a|C|817
12DP|1|2a|G|818
12DP|1|2a|A|819
12DP|1|2a|U|820
12DP|1|2a|G|821
*
12DP|1|2a|C|879
12DP|1|2a|C|880

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2h

30S ribosomal protein S8

Chain 2l

30S ribosomal protein S12

Chain 2o

30S ribosomal protein S15

Chain 2q

30S ribosomal protein S17