J4_12DQ_001

3D structure

PDB id

12DQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

12DQ|1|1A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_12DQ_001 not in the Motif Atlas

Homologous match to J4_7A0S_001

Geometric discrepancy: 0.2594

The information below is about J4_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.4

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

12

Unit IDs

12DQ|1|1A|C|268
12DQ|1|1A|U|269
*
12DQ|1|1A|G|370
12DQ|1|1A|A|371
12DQ|1|1A|G|372
12DQ|1|1A|U|373
12DQ|1|1A|A|374
12DQ|1|1A|C|375
*
12DQ|1|1A|G|399
12DQ|1|1A|G|400
12DQ|1|1A|A|401
12DQ|1|1A|A|402
12DQ|1|1A|U|403
12DQ|1|1A|C|404
12DQ|1|1A|U|405
12DQ|1|1A|G|406
*
12DQ|1|1A|U|421
12DQ|1|1A|A|422
12DQ|1|1A|A|423
12DQ|1|1A|G|424

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L28

Chain 1I

50S ribosomal protein L9