J4_12DQ_005

3D structure

PDB id

12DQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

UC*GGUUAG*CU*ACCCGUA

Length

17 nucleotides

Bulged bases

12DQ|1|1A|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_12DQ_005 not in the Motif Atlas

Homologous match to J4_7A0S_006

Geometric discrepancy: 0.1457

The information below is about J4_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_48150.2

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

9

Unit IDs

12DQ|1|1A|U|1313
12DQ|1|1A|C|1314
*
12DQ|1|1A|G|1338
12DQ|1|1A|G|1339
12DQ|1|1A|U|1340
12DQ|1|1A|U|1341
12DQ|1|1A|A|1342
12DQ|1|1A|G|1343
*
12DQ|1|1A|C|1404
12DQ|1|1A|U|1405
*
12DQ|1|1A|A|1597
12DQ|1|1A|C|1598
12DQ|1|1A|C|1599
12DQ|1|1A|C|1600
12DQ|1|1A|G|1601
12DQ|1|1A|U|1602
12DQ|1|1A|A|1603

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1X

50S ribosomal protein L23