J4_1ASY_002
3D structure
- PDB id
- 1ASY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CLASS II AMINOACYL TRANSFER RNA SYNTHETASES: CRYSTAL STRUCTURE OF YEAST ASPARTYL-TRNA SYNTHETASE COMPLEXED WITH TRNA ASP
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- AUAG*UGG*CAGAU(5MC)*GU
- Length
- 15 nucleotides
- Bulged bases
- 1ASY|1|S|U|608, 1ASY|1|S|U|648
- QA status
- Modified nucleotides: 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_1ASY_002 not in the Motif Atlas
- Homologous match to J4_1IL2_001
- Geometric discrepancy: 0.1447
- The information below is about J4_1IL2_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 48
Unit IDs
1ASY|1|S|A|607
1ASY|1|S|U|608
1ASY|1|S|A|609
1ASY|1|S|G|610
*
1ASY|1|S|U|625
1ASY|1|S|G|626
1ASY|1|S|G|627
*
1ASY|1|S|C|643
1ASY|1|S|A|644
1ASY|1|S|G|645
1ASY|1|S|A|646
1ASY|1|S|U|648
1ASY|1|S|5MC|649
*
1ASY|1|S|G|665
1ASY|1|S|U|666
Current chains
- Chain S
- T-RNA (75-MER)
Nearby chains
- Chain A
- ASPARTYL-tRNA SYNTHETASE
- Chain B
- ASPARTYL-tRNA SYNTHETASE
Coloring options: