J4_1ASZ_001
3D structure
- PDB id
- 1ASZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- THE ACTIVE SITE OF YEAST ASPARTYL-TRNA SYNTHETASE: STRUCTURAL AND FUNCTIONAL ASPECTS OF THE AMINOACYLATION REACTION
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- AUAG*UGG*CAGAU(5MC)*GU
- Length
- 15 nucleotides
- Bulged bases
- 1ASZ|1|R|U|608, 1ASZ|1|R|U|648
- QA status
- Modified nucleotides: 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_1ASZ_001 not in the Motif Atlas
- Homologous match to J4_1IL2_001
- Geometric discrepancy: 0.1798
- The information below is about J4_1IL2_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 48
Unit IDs
1ASZ|1|R|A|607
1ASZ|1|R|U|608
1ASZ|1|R|A|609
1ASZ|1|R|G|610
*
1ASZ|1|R|U|625
1ASZ|1|R|G|626
1ASZ|1|R|G|627
*
1ASZ|1|R|C|643
1ASZ|1|R|A|644
1ASZ|1|R|G|645
1ASZ|1|R|A|646
1ASZ|1|R|U|648
1ASZ|1|R|5MC|649
*
1ASZ|1|R|G|665
1ASZ|1|R|U|666
Current chains
- Chain R
- T-RNA (75-MER)
Nearby chains
- Chain A
- ASPARTYL-tRNA SYNTHETASE
Coloring options: