J4_1FFK_001

3D structure

PDB id

1FFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CC*GAGUAG*CGAAUAAC*GAAG

Length

20 nucleotides

Bulged bases

1FFK|1|0|A|411

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1FFK_001 not in the Motif Atlas

Homologous match to J4_4V9F_001

Geometric discrepancy: 0.0312

The information below is about J4_4V9F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

1FFK|1|0|C|239
1FFK|1|0|C|240
*
1FFK|1|0|G|379
1FFK|1|0|A|380
1FFK|1|0|G|381
1FFK|1|0|U|382
1FFK|1|0|A|383
1FFK|1|0|G|384
*
1FFK|1|0|C|405
1FFK|1|0|G|406
1FFK|1|0|A|407
1FFK|1|0|A|408
1FFK|1|0|U|409
1FFK|1|0|A|410
1FFK|1|0|A|411
1FFK|1|0|C|412
*
1FFK|1|0|G|428
1FFK|1|0|A|429
1FFK|1|0|A|430
1FFK|1|0|G|431

Current chains

Chain 0

23S RRNA

Nearby chains

Chain I

RIBOSOMAL PROTEIN L15E