J4_1FFK_007

3D structure

PDB id

1FFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

1FFK|1|0|U|2012

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1FFK_007 not in the Motif Atlas

Homologous match to J4_4V9F_008

Geometric discrepancy: 0.046

The information below is about J4_4V9F_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

1FFK|1|0|C|1889
1FFK|1|0|U|1890
1FFK|1|0|G|1891
*
1FFK|1|0|C|1946
1FFK|1|0|G|1947
*
1FFK|1|0|C|1965
1FFK|1|0|U|1966
1FFK|1|0|U|1967
1FFK|1|0|A|1968
1FFK|1|0|A|1969
1FFK|1|0|G|1970
1FFK|1|0|G|1971
1FFK|1|0|U|1972
1FFK|1|0|A|1973
1FFK|1|0|G|1974
*
1FFK|1|0|U|2008
1FFK|1|0|G|2009
1FFK|1|0|A|2010
1FFK|1|0|A|2011
1FFK|1|0|U|2012
1FFK|1|0|G|2013

Current chains

Chain 0

23S RRNA

Nearby chains

Chain A

RIBOSOMAL PROTEIN L2