J4_1HNW_001

3D structure

PDB id

1HNW (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH TETRACYCLINE

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

1HNW|1|A|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1HNW_001 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.0562

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

1HNW|1|A|G|115
1HNW|1|A|A|116
1HNW|1|A|G|117
1HNW|1|A|U|118
1HNW|1|A|A|119
1HNW|1|A|A|120
1HNW|1|A|C|121
1HNW|1|A|G|122
*
1HNW|1|A|U|239
1HNW|1|A|C|240
*
1HNW|1|A|G|286
1HNW|1|A|U|287
1HNW|1|A|A|288
1HNW|1|A|G|289
*
1HNW|1|A|C|311
1HNW|1|A|C|312

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain P

30S RIBOSOMAL PROTEIN S16

Chain Q

30S RIBOSOMAL PROTEIN S17