J4_1I97_001

3D structure

PDB id

1I97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS IN COMPLEX WITH TETRACYCLINE

Experimental method

X-RAY DIFFRACTION

Resolution

4.5 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

1I97|1|A|C|114

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1I97_001 not in the Motif Atlas

Homologous match to J4_6CZR_027

Geometric discrepancy: 0.1478

The information below is about J4_6CZR_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.2

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

1I97|1|A|G|108
1I97|1|A|A|109
1I97|1|A|G|110
1I97|1|A|U|111
1I97|1|A|A|112
1I97|1|A|A|113
1I97|1|A|C|114
1I97|1|A|G|115
*
1I97|1|A|U|234
1I97|1|A|C|235
*
1I97|1|A|G|281
1I97|1|A|U|282
1I97|1|A|A|283
1I97|1|A|G|284
*
1I97|1|A|C|306
1I97|1|A|C|307

Current chains

Chain A

16S RRNA

Nearby chains

Chain P

30S RIBOSOMAL PROTEIN S16

Chain Q

30S RIBOSOMAL PROTEIN S17