J4_1IBK_001

3D structure

PDB id

1IBK (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH THE ANTIBIOTIC PAROMOMYCIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.31 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

1IBK|1|A|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1IBK_001 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.0502

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

1IBK|1|A|G|115
1IBK|1|A|A|116
1IBK|1|A|G|117
1IBK|1|A|U|118
1IBK|1|A|A|119
1IBK|1|A|A|120
1IBK|1|A|C|121
1IBK|1|A|G|122
*
1IBK|1|A|U|239
1IBK|1|A|C|240
*
1IBK|1|A|G|286
1IBK|1|A|U|287
1IBK|1|A|A|288
1IBK|1|A|G|289
*
1IBK|1|A|C|311
1IBK|1|A|C|312

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain P

30S RIBOSOMAL PROTEIN S16

Chain Q

30S RIBOSOMAL PROTEIN S17