J4_1IL2_002

3D structure

PDB id

1IL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the E. coli Aspartyl-tRNA Synthetase:Yeast tRNAasp:aspartyl-Adenylate Complex

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

AUAG*UGG*CAGAU(5MC)*GU

Length

15 nucleotides

Bulged bases

1IL2|1|D|U|1908, 1IL2|1|D|U|1948

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1IL2_002 not in the Motif Atlas

Homologous match to J4_1IL2_001

Geometric discrepancy: 0.2223

The information below is about J4_1IL2_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_70449.27

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

53

Unit IDs

1IL2|1|D|A|1907
1IL2|1|D|U|1908
1IL2|1|D|A|1909
1IL2|1|D|G|1910
*
1IL2|1|D|U|1925
1IL2|1|D|G|1926
1IL2|1|D|G|1927
*
1IL2|1|D|C|1943
1IL2|1|D|A|1944
1IL2|1|D|G|1945
1IL2|1|D|A|1946
1IL2|1|D|U|1948
1IL2|1|D|5MC|1949
*
1IL2|1|D|G|1965
1IL2|1|D|U|1966

Current chains

Chain D

ASPARTYL TRANSFER RNA

Nearby chains

Chain A

ASPARTYL-TRNA SYNTHETASE

Chain B

ASPARTYL-TRNA SYNTHETASE