J4_1J5A_002

3D structure

PDB id

1J5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGUUC*GGAAAG*CC*GCCCGUAC

Length

21 nucleotides

Bulged bases

1J5A|1|A|A|1354

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1J5A_002 not in the Motif Atlas

Homologous match to J4_7A0S_005

Geometric discrepancy: 0.2752

The information below is about J4_7A0S_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77353.1

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

1J5A|1|A|G|1323
1J5A|1|A|G|1324
1J5A|1|A|U|1325
1J5A|1|A|U|1326
1J5A|1|A|C|1327
*
1J5A|1|A|G|1351
1J5A|1|A|G|1352
1J5A|1|A|A|1353
1J5A|1|A|A|1354
1J5A|1|A|A|1355
1J5A|1|A|G|1356
*
1J5A|1|A|C|1417
1J5A|1|A|C|1418
*
1J5A|1|A|G|1613
1J5A|1|A|C|1614
1J5A|1|A|C|1615
1J5A|1|A|C|1616
1J5A|1|A|G|1617
1J5A|1|A|U|1618
1J5A|1|A|A|1619
1J5A|1|A|C|1620

Current chains

Chain A

23S RRNA

Nearby chains