J4_1J5A_007

3D structure

PDB id

1J5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

AUG*UUGGUACGCUCAAGGGCG*CACAUGCCUCAGACGUAUCGGGAG*CGAAGU

Length

51 nucleotides

Bulged bases

1J5A|1|A|U|1459, 1J5A|1|A|C|1489, 1J5A|1|A|A|1525

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1J5A|1|A|A|1458
1J5A|1|A|U|1459
1J5A|1|A|G|1460
*
1J5A|1|A|U|1481
1J5A|1|A|U|1482
1J5A|1|A|G|1483
1J5A|1|A|G|1484
1J5A|1|A|U|1485
1J5A|1|A|A|1486
1J5A|1|A|C|1487
1J5A|1|A|G|1488
1J5A|1|A|C|1489
1J5A|1|A|U|1490
1J5A|1|A|C|1491
1J5A|1|A|A|1492
1J5A|1|A|A|1493
1J5A|1|A|G|1494
1J5A|1|A|G|1495
1J5A|1|A|G|1496
1J5A|1|A|C|1497
1J5A|1|A|G|1498
*
1J5A|1|A|C|1522
1J5A|1|A|A|1523
1J5A|1|A|C|1524
1J5A|1|A|A|1525
1J5A|1|A|U|1526
1J5A|1|A|G|1527
1J5A|1|A|C|1528
1J5A|1|A|C|1529
1J5A|1|A|U|1530
1J5A|1|A|C|1531
1J5A|1|A|A|1532
1J5A|1|A|G|1533
1J5A|1|A|A|1534
1J5A|1|A|C|1535
1J5A|1|A|G|1536
1J5A|1|A|U|1537
1J5A|1|A|A|1538
1J5A|1|A|U|1539
1J5A|1|A|C|1540
1J5A|1|A|G|1541
1J5A|1|A|G|1542
1J5A|1|A|G|1543
1J5A|1|A|A|1544
1J5A|1|A|G|1545
*
1J5A|1|A|C|1558
1J5A|1|A|G|1559
1J5A|1|A|A|1560
1J5A|1|A|A|1561
1J5A|1|A|G|1562
1J5A|1|A|U|1563

Current chains

Chain A

23S RRNA

Nearby chains