3D structure

PDB id
1J5E (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Thermus thermophilus 30S Ribosomal Subunit
Experimental method
X-RAY DIFFRACTION
Resolution
3.05 Å

Loop

Sequence
GGG*CGAAAG*CCCUAAACGAUG*CC
Length
23 nucleotides
Bulged bases
1J5E|1|A|A|815
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_1J5E_003 not in the Motif Atlas
Homologous match to J4_4LFB_003
Geometric discrepancy: 0.0428
The information below is about J4_4LFB_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_61885.6
Basepair signature
cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
Number of instances in this motif group
4

Unit IDs

1J5E|1|A|G|575
1J5E|1|A|G|576
1J5E|1|A|G|577
*
1J5E|1|A|C|764
1J5E|1|A|G|765
1J5E|1|A|A|766
1J5E|1|A|A|767
1J5E|1|A|A|768
1J5E|1|A|G|769
*
1J5E|1|A|C|810
1J5E|1|A|C|811
1J5E|1|A|C|812
1J5E|1|A|U|813
1J5E|1|A|A|814
1J5E|1|A|A|815
1J5E|1|A|A|816
1J5E|1|A|C|817
1J5E|1|A|G|818
1J5E|1|A|A|819
1J5E|1|A|U|820
1J5E|1|A|G|821
*
1J5E|1|A|C|879
1J5E|1|A|C|880

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain H
30S RIBOSOMAL PROTEIN S8
Chain L
30S RIBOSOMAL PROTEIN S12
Chain O
30S RIBOSOMAL PROTEIN S15
Chain Q
30S RIBOSOMAL PROTEIN S17

Coloring options:


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