J4_1JJ2_005
3D structure
- PDB id
- 1JJ2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Fully Refined Crystal Structure of the Haloarcula marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.4 Å
Loop
- Sequence
- UC*GGUUAG*CC*GUCCGUA
- Length
- 17 nucleotides
- Bulged bases
- 1JJ2|1|0|U|1447
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_1JJ2_005 not in the Motif Atlas
- Homologous match to J4_4V9F_005
- Geometric discrepancy: 0.0172
- The information below is about J4_4V9F_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_48150.1
- Basepair signature
- cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 8
Unit IDs
1JJ2|1|0|U|1419
1JJ2|1|0|C|1420
*
1JJ2|1|0|G|1444
1JJ2|1|0|G|1445
1JJ2|1|0|U|1446
1JJ2|1|0|U|1447
1JJ2|1|0|A|1448
1JJ2|1|0|G|1449
*
1JJ2|1|0|C|1513
1JJ2|1|0|C|1514
*
1JJ2|1|0|G|1672
1JJ2|1|0|U|1673
1JJ2|1|0|C|1674
1JJ2|1|0|C|1675
1JJ2|1|0|G|1676
1JJ2|1|0|U|1677
1JJ2|1|0|A|1678
Current chains
- Chain 0
- 23S RRNA
Nearby chains
- Chain 1
- RIBOSOMAL PROTEIN L39E
- Chain O
- RIBOSOMAL PROTEIN L19E
- Chain R
- RIBOSOMAL PROTEIN L23
- Chain U
- RIBOSOMAL PROTEIN L29
Coloring options: