J4_1JJ2_007

3D structure

PDB id

1JJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fully Refined Crystal Structure of the Haloarcula marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GACUG*CAUAG*UGAAU*AUUAAC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1JJ2_007 not in the Motif Atlas

Homologous match to J4_4V9F_007

Geometric discrepancy: 0.0164

The information below is about J4_4V9F_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_78485.1

Basepair signature

cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW

Number of instances in this motif group

6

Unit IDs

1JJ2|1|0|G|1828
1JJ2|1|0|A|1829
1JJ2|1|0|C|1830
1JJ2|1|0|U|1831
1JJ2|1|0|G|1832
*
1JJ2|1|0|C|1844
1JJ2|1|0|A|1845
1JJ2|1|0|U|1846
1JJ2|1|0|A|1847
1JJ2|1|0|G|1848
*
1JJ2|1|0|U|1883
1JJ2|1|0|G|1884
1JJ2|1|0|A|1885
1JJ2|1|0|A|1886
1JJ2|1|0|U|1887
*
1JJ2|1|0|A|2015
1JJ2|1|0|U|2016
1JJ2|1|0|U|2017
1JJ2|1|0|A|2018
1JJ2|1|0|A|2019
1JJ2|1|0|C|2020

Current chains

Chain 0

23S RRNA

Nearby chains

Chain A

RIBOSOMAL PROTEIN L2

Chain Y

RIBOSOMAL PROTEIN L37Ae