J4_4V9F_007

3D structure

PDB id

4V9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The re-refined crystal structure of the Haloarcula marismortui large ribosomal subunit at 2.4 Angstrom resolution: more complete structure of the L7/L12 and L1 stalk, L5 and LX proteins

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GACUG*CAUAG*UGAAU*AUUAAC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V9F|1|0|G|1828
4V9F|1|0|A|1829
4V9F|1|0|C|1830
4V9F|1|0|U|1831
4V9F|1|0|G|1832
*
4V9F|1|0|C|1844
4V9F|1|0|A|1845
4V9F|1|0|U|1846
4V9F|1|0|A|1847
4V9F|1|0|G|1848
*
4V9F|1|0|U|1883
4V9F|1|0|G|1884
4V9F|1|0|A|1885
4V9F|1|0|A|1886
4V9F|1|0|U|1887
*
4V9F|1|0|A|2015
4V9F|1|0|U|2016
4V9F|1|0|U|2017
4V9F|1|0|A|2018
4V9F|1|0|A|2019
4V9F|1|0|C|2020

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2P

Chain Z

50S ribosomal protein L37Ae