J4_1JJ2_008

3D structure

PDB id

1JJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fully Refined Crystal Structure of the Haloarcula marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

1JJ2|1|0|U|2012

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1JJ2_008 not in the Motif Atlas

Homologous match to J4_4V9F_008

Geometric discrepancy: 0.0341

The information below is about J4_4V9F_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

1JJ2|1|0|C|1889
1JJ2|1|0|U|1890
1JJ2|1|0|G|1891
*
1JJ2|1|0|C|1946
1JJ2|1|0|G|1947
*
1JJ2|1|0|C|1965
1JJ2|1|0|U|1966
1JJ2|1|0|U|1967
1JJ2|1|0|A|1968
1JJ2|1|0|A|1969
1JJ2|1|0|G|1970
1JJ2|1|0|G|1971
1JJ2|1|0|U|1972
1JJ2|1|0|A|1973
1JJ2|1|0|G|1974
*
1JJ2|1|0|U|2008
1JJ2|1|0|G|2009
1JJ2|1|0|A|2010
1JJ2|1|0|A|2011
1JJ2|1|0|U|2012
1JJ2|1|0|G|2013

Current chains

Chain 0

23S RRNA

Nearby chains

Chain A

RIBOSOMAL PROTEIN L2

Chain Y

RIBOSOMAL PROTEIN L37Ae