J4_1K01_001
3D structure
- PDB id
- 1K01 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- CGAUAAA*UC*GCGC*GG
- Length
- 15 nucleotides
- Bulged bases
- 1K01|1|A|G|1284, 1K01|1|A|A|1285, 1K01|1|A|U|1286, 1K01|1|A|A|1287, 1K01|1|A|A|1288, 1K01|1|A|C|1663, 1K01|1|A|G|1664
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_1K01_001 not in the Motif Atlas
- Homologous match to J4_7A0S_004
- Geometric discrepancy: 0.2315
- The information below is about J4_7A0S_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_64571.6
- Basepair signature
- cWW-F-cWW-tSS-cWW-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
1K01|1|A|C|1283
1K01|1|A|G|1284
1K01|1|A|A|1285
1K01|1|A|U|1286
1K01|1|A|A|1287
1K01|1|A|A|1288
1K01|1|A|A|1289
*
1K01|1|A|U|1307
1K01|1|A|C|1308
*
1K01|1|A|G|1662
1K01|1|A|C|1663
1K01|1|A|G|1664
1K01|1|A|C|1665
*
1K01|1|A|G|1992
1K01|1|A|G|1993
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain L
- Ribosomal Protein L22
- Chain M
- Ribosomal Protein L32
Coloring options: