J4_1K01_006

3D structure

PDB id

1K01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAGU*AAC*GGAACG*CAGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1K01_006 not in the Motif Atlas

Homologous match to J4_7A0S_010

Geometric discrepancy: 0.1232

The information below is about J4_7A0S_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_54165.1

Basepair signature

cWW-F-F-F-cWW-cWW-cWW-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

1K01|1|A|G|2622
1K01|1|A|A|2623
1K01|1|A|G|2624
1K01|1|A|U|2625
*
1K01|1|A|A|2653
1K01|1|A|A|2654
1K01|1|A|C|2655
*
1K01|1|A|G|2711
1K01|1|A|G|2712
1K01|1|A|A|2713
1K01|1|A|A|2714
1K01|1|A|C|2715
1K01|1|A|G|2716
*
1K01|1|A|C|2748
1K01|1|A|A|2749
1K01|1|A|G|2750
1K01|1|A|C|2751

Current chains

Chain A

23S rRNA

Nearby chains