J4_1K8A_004
3D structure
- PDB id
- 1K8A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-crystal structure of Carbomycin A bound to the 50S ribosomal subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GGUUC*GGUUAG*CC*GUCCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 1K8A|1|A|U|1447
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_1K8A_004 not in the Motif Atlas
- Homologous match to J4_4V9F_004
- Geometric discrepancy: 0.0244
- The information below is about J4_4V9F_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_69051.6
- Basepair signature
- cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
1K8A|1|A|G|1416
1K8A|1|A|G|1417
1K8A|1|A|U|1418
1K8A|1|A|U|1419
1K8A|1|A|C|1420
*
1K8A|1|A|G|1444
1K8A|1|A|G|1445
1K8A|1|A|U|1446
1K8A|1|A|U|1447
1K8A|1|A|A|1448
1K8A|1|A|G|1449
*
1K8A|1|A|C|1513
1K8A|1|A|C|1514
*
1K8A|1|A|G|1672
1K8A|1|A|U|1673
1K8A|1|A|C|1674
1K8A|1|A|C|1675
1K8A|1|A|G|1676
1K8A|1|A|U|1677
1K8A|1|A|A|1678
1K8A|1|A|C|1679
Current chains
- Chain A
- 23S RRNA
Nearby chains
- Chain 2
- RIBOSOMAL PROTEIN L37E
- Chain 3
- RIBOSOMAL PROTEIN L39E
- Chain Q
- RIBOSOMAL PROTEIN L19E
- Chain T
- RIBOSOMAL PROTEIN L23
- Chain W
- RIBOSOMAL PROTEIN L29
Coloring options: