J4_4V9F_004
3D structure
- PDB id
- 4V9F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The re-refined crystal structure of the Haloarcula marismortui large ribosomal subunit at 2.4 Angstrom resolution: more complete structure of the L7/L12 and L1 stalk, L5 and LX proteins
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.4 Å
Loop
- Sequence
- GGUUC*GGUUAG*CC*GUCCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 4V9F|1|0|U|1447
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_69051.6
- Basepair signature
- cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
4V9F|1|0|G|1416
4V9F|1|0|G|1417
4V9F|1|0|U|1418
4V9F|1|0|U|1419
4V9F|1|0|C|1420
*
4V9F|1|0|G|1444
4V9F|1|0|G|1445
4V9F|1|0|U|1446
4V9F|1|0|U|1447
4V9F|1|0|A|1448
4V9F|1|0|G|1449
*
4V9F|1|0|C|1513
4V9F|1|0|C|1514
*
4V9F|1|0|G|1672
4V9F|1|0|U|1673
4V9F|1|0|C|1674
4V9F|1|0|C|1675
4V9F|1|0|G|1676
4V9F|1|0|U|1677
4V9F|1|0|A|1678
4V9F|1|0|C|1679
Current chains
- Chain 0
- 23S Ribosomal RNA
Nearby chains
- Chain 1
- 50S ribosomal protein L37e
- Chain 2
- 50S ribosomal protein L39e
- Chain P
- 50S ribosomal protein L19e
- Chain S
- 50S ribosomal protein L23P
- Chain V
- 50S ribosomal protein L29P
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