J4_1K8A_008

3D structure

PDB id

1K8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of Carbomycin A bound to the 50S ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

1K8A|1|A|U|2012

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1K8A_008 not in the Motif Atlas

Homologous match to J4_4V9F_008

Geometric discrepancy: 0.0405

The information below is about J4_4V9F_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

1K8A|1|A|C|1889
1K8A|1|A|U|1890
1K8A|1|A|G|1891
*
1K8A|1|A|C|1946
1K8A|1|A|G|1947
*
1K8A|1|A|C|1965
1K8A|1|A|U|1966
1K8A|1|A|U|1967
1K8A|1|A|A|1968
1K8A|1|A|A|1969
1K8A|1|A|G|1970
1K8A|1|A|G|1971
1K8A|1|A|U|1972
1K8A|1|A|A|1973
1K8A|1|A|G|1974
*
1K8A|1|A|U|2008
1K8A|1|A|G|2009
1K8A|1|A|A|2010
1K8A|1|A|A|2011
1K8A|1|A|U|2012
1K8A|1|A|G|2013

Current chains

Chain A

23S RRNA

Nearby chains

Chain 1

RIBOSOMAL PROTEIN L37Ae

Chain C

RIBOSOMAL PROTEIN L2