J4_1K9M_001

3D structure

PDB id

1K9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of tylosin bound to the 50S ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CC*GAGUAG*CGAAUAAC*GAAG

Length

20 nucleotides

Bulged bases

1K9M|1|A|A|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1K9M_001 not in the Motif Atlas

Homologous match to J4_4V9F_001

Geometric discrepancy: 0.0319

The information below is about J4_4V9F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

1K9M|1|A|C|239
1K9M|1|A|C|240
*
1K9M|1|A|G|379
1K9M|1|A|A|380
1K9M|1|A|G|381
1K9M|1|A|U|382
1K9M|1|A|A|383
1K9M|1|A|G|384
*
1K9M|1|A|C|405
1K9M|1|A|G|406
1K9M|1|A|A|407
1K9M|1|A|A|408
1K9M|1|A|U|409
1K9M|1|A|A|410
1K9M|1|A|A|411
1K9M|1|A|C|412
*
1K9M|1|A|G|428
1K9M|1|A|A|429
1K9M|1|A|A|430
1K9M|1|A|G|431

Current chains

Chain A

23S RRNA

Nearby chains

Chain N

RIBOSOMAL PROTEIN L15E