J4_1KC8_001

3D structure

PDB id

1KC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal Structure of Blasticidin S Bound to the 50S Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.01 Å

Loop

Sequence

CC*GAGUAG*CGAAUAAC*GAAG

Length

20 nucleotides

Bulged bases

1KC8|1|A|A|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1KC8_001 not in the Motif Atlas

Homologous match to J4_4V9F_001

Geometric discrepancy: 0.0253

The information below is about J4_4V9F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

1KC8|1|A|C|239
1KC8|1|A|C|240
*
1KC8|1|A|G|379
1KC8|1|A|A|380
1KC8|1|A|G|381
1KC8|1|A|U|382
1KC8|1|A|A|383
1KC8|1|A|G|384
*
1KC8|1|A|C|405
1KC8|1|A|G|406
1KC8|1|A|A|407
1KC8|1|A|A|408
1KC8|1|A|U|409
1KC8|1|A|A|410
1KC8|1|A|A|411
1KC8|1|A|C|412
*
1KC8|1|A|G|428
1KC8|1|A|A|429
1KC8|1|A|A|430
1KC8|1|A|G|431

Current chains

Chain A

23S RRNA

Nearby chains

Chain N

RIBOSOMAL PROTEIN L15E