J4_1KC8_008
3D structure
- PDB id
- 1KC8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-crystal Structure of Blasticidin S Bound to the 50S Ribosomal Subunit
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.01 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 1KC8|1|A|U|2012
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_1KC8_008 not in the Motif Atlas
- Homologous match to J4_4V9F_008
- Geometric discrepancy: 0.0364
- The information below is about J4_4V9F_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_93343.1
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 4
Unit IDs
1KC8|1|A|C|1889
1KC8|1|A|U|1890
1KC8|1|A|G|1891
*
1KC8|1|A|C|1946
1KC8|1|A|G|1947
*
1KC8|1|A|C|1965
1KC8|1|A|U|1966
1KC8|1|A|U|1967
1KC8|1|A|A|1968
1KC8|1|A|A|1969
1KC8|1|A|G|1970
1KC8|1|A|G|1971
1KC8|1|A|U|1972
1KC8|1|A|A|1973
1KC8|1|A|G|1974
*
1KC8|1|A|U|2008
1KC8|1|A|G|2009
1KC8|1|A|A|2010
1KC8|1|A|A|2011
1KC8|1|A|U|2012
1KC8|1|A|G|2013
Current chains
- Chain A
- 23S RRNA
Nearby chains
- Chain 1
- RIBOSOMAL PROTEIN L37Ae
- Chain C
- RIBOSOMAL PROTEIN L2
Coloring options: