J4_1KD1_007
3D structure
- PDB id
- 1KD1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-crystal Structure of Spiramycin bound to the 50S Ribosomal Subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GACUG*CAUAG*UGAAU*AUUAAC
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_1KD1_007 not in the Motif Atlas
- Homologous match to J4_4V9F_007
- Geometric discrepancy: 0.0291
- The information below is about J4_4V9F_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_78485.1
- Basepair signature
- cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
1KD1|1|A|G|1828
1KD1|1|A|A|1829
1KD1|1|A|C|1830
1KD1|1|A|U|1831
1KD1|1|A|G|1832
*
1KD1|1|A|C|1844
1KD1|1|A|A|1845
1KD1|1|A|U|1846
1KD1|1|A|A|1847
1KD1|1|A|G|1848
*
1KD1|1|A|U|1883
1KD1|1|A|G|1884
1KD1|1|A|A|1885
1KD1|1|A|A|1886
1KD1|1|A|U|1887
*
1KD1|1|A|A|2015
1KD1|1|A|U|2016
1KD1|1|A|U|2017
1KD1|1|A|A|2018
1KD1|1|A|A|2019
1KD1|1|A|C|2020
Current chains
- Chain A
- 23S RRNA
Nearby chains
- Chain 1
- RIBOSOMAL PROTEIN L37Ae
- Chain C
- RIBOSOMAL PROTEIN L2
Coloring options: