J4_1KQS_001

3D structure

PDB id

1KQS (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Haloarcula marismortui 50S Complexed with a Pretranslocational Intermediate in Protein Synthesis

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CC*GAGUAG*CGAAUAAC*GAAG

Length

20 nucleotides

Bulged bases

1KQS|1|0|A|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1KQS_001 not in the Motif Atlas

Homologous match to J4_4V9F_001

Geometric discrepancy: 0.0276

The information below is about J4_4V9F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

1KQS|1|0|C|239
1KQS|1|0|C|240
*
1KQS|1|0|G|379
1KQS|1|0|A|380
1KQS|1|0|G|381
1KQS|1|0|U|382
1KQS|1|0|A|383
1KQS|1|0|G|384
*
1KQS|1|0|C|405
1KQS|1|0|G|406
1KQS|1|0|A|407
1KQS|1|0|A|408
1KQS|1|0|U|409
1KQS|1|0|A|410
1KQS|1|0|A|411
1KQS|1|0|C|412
*
1KQS|1|0|G|428
1KQS|1|0|A|429
1KQS|1|0|A|430
1KQS|1|0|G|431

Current chains

Chain 0

23S RRNA

Nearby chains

Chain L

RIBOSOMAL PROTEIN L15E