J4_1KQS_007

3D structure

PDB id

1KQS (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Haloarcula marismortui 50S Complexed with a Pretranslocational Intermediate in Protein Synthesis

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GACUG*CAUAG*UGAAU*AUUAAC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1KQS_007 not in the Motif Atlas

Homologous match to J4_4V9F_007

Geometric discrepancy: 0.029

The information below is about J4_4V9F_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_78485.1

Basepair signature

cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW

Number of instances in this motif group

6

Unit IDs

1KQS|1|0|G|1828
1KQS|1|0|A|1829
1KQS|1|0|C|1830
1KQS|1|0|U|1831
1KQS|1|0|G|1832
*
1KQS|1|0|C|1844
1KQS|1|0|A|1845
1KQS|1|0|U|1846
1KQS|1|0|A|1847
1KQS|1|0|G|1848
*
1KQS|1|0|U|1883
1KQS|1|0|G|1884
1KQS|1|0|A|1885
1KQS|1|0|A|1886
1KQS|1|0|U|1887
*
1KQS|1|0|A|2015
1KQS|1|0|U|2016
1KQS|1|0|U|2017
1KQS|1|0|A|2018
1KQS|1|0|A|2019
1KQS|1|0|C|2020

Current chains

Chain 0

23S RRNA

Nearby chains

Chain A

RIBOSOMAL PROTEIN L2

Chain Y

RIBOSOMAL PROTEIN L37Ae