J4_1KQS_008

3D structure

PDB id

1KQS (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Haloarcula marismortui 50S Complexed with a Pretranslocational Intermediate in Protein Synthesis

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

1KQS|1|0|U|2012

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1KQS_008 not in the Motif Atlas

Homologous match to J4_4V9F_008

Geometric discrepancy: 0.0419

The information below is about J4_4V9F_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

1KQS|1|0|C|1889
1KQS|1|0|U|1890
1KQS|1|0|G|1891
*
1KQS|1|0|C|1946
1KQS|1|0|G|1947
*
1KQS|1|0|C|1965
1KQS|1|0|U|1966
1KQS|1|0|U|1967
1KQS|1|0|A|1968
1KQS|1|0|A|1969
1KQS|1|0|G|1970
1KQS|1|0|G|1971
1KQS|1|0|U|1972
1KQS|1|0|A|1973
1KQS|1|0|G|1974
*
1KQS|1|0|U|2008
1KQS|1|0|G|2009
1KQS|1|0|A|2010
1KQS|1|0|A|2011
1KQS|1|0|U|2012
1KQS|1|0|G|2013

Current chains

Chain 0

23S RRNA

Nearby chains

Chain A

RIBOSOMAL PROTEIN L2

Chain Y

RIBOSOMAL PROTEIN L37Ae