J4_1M90_001
3D structure
- PDB id
- 1M90 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-crystal structure of CCA-Phe-caproic acid-biotin and sparsomycin bound to the 50S ribosomal subunit
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CC*GAGUAG*CGAAUAAC*GAAG
- Length
- 20 nucleotides
- Bulged bases
- 1M90|1|A|A|411
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_1M90_001 not in the Motif Atlas
- Homologous match to J4_4V9F_001
- Geometric discrepancy: 0.0241
- The information below is about J4_4V9F_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_45801.6
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
1M90|1|A|C|239
1M90|1|A|C|240
*
1M90|1|A|G|379
1M90|1|A|A|380
1M90|1|A|G|381
1M90|1|A|U|382
1M90|1|A|A|383
1M90|1|A|G|384
*
1M90|1|A|C|405
1M90|1|A|G|406
1M90|1|A|A|407
1M90|1|A|A|408
1M90|1|A|U|409
1M90|1|A|A|410
1M90|1|A|A|411
1M90|1|A|C|412
*
1M90|1|A|G|428
1M90|1|A|A|429
1M90|1|A|A|430
1M90|1|A|G|431
Current chains
- Chain A
- 23S RRNA
Nearby chains
- Chain N
- RIBOSOMAL PROTEIN L15E
Coloring options: