3D structure

PDB id
1M90 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Co-crystal structure of CCA-Phe-caproic acid-biotin and sparsomycin bound to the 50S ribosomal subunit
Experimental method
X-RAY DIFFRACTION
Resolution
2.8 Å

Loop

Sequence
CC*GAGUAG*CGAAUAAC*GAAG
Length
20 nucleotides
Bulged bases
1M90|1|A|A|411
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_1M90_001 not in the Motif Atlas
Homologous match to J4_4V9F_001
Geometric discrepancy: 0.0241
The information below is about J4_4V9F_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_45801.6
Basepair signature
cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW
Number of instances in this motif group
7

Unit IDs

1M90|1|A|C|239
1M90|1|A|C|240
*
1M90|1|A|G|379
1M90|1|A|A|380
1M90|1|A|G|381
1M90|1|A|U|382
1M90|1|A|A|383
1M90|1|A|G|384
*
1M90|1|A|C|405
1M90|1|A|G|406
1M90|1|A|A|407
1M90|1|A|A|408
1M90|1|A|U|409
1M90|1|A|A|410
1M90|1|A|A|411
1M90|1|A|C|412
*
1M90|1|A|G|428
1M90|1|A|A|429
1M90|1|A|A|430
1M90|1|A|G|431

Current chains

Chain A
23S RRNA

Nearby chains

Chain N
RIBOSOMAL PROTEIN L15E

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.123 s