J4_1N77_001

3D structure

PDB id

1N77 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Thermus thermophilus glutamyl-tRNA synthetase complexed with tRNA(Glu) and ATP.

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

AUCG*CGC*GAAACG*CU

Length

15 nucleotides

Bulged bases

1N77|1|C|U|508, 1N77|1|C|C|548

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1N77_001 not in the Motif Atlas

Homologous match to J4_1N78_001

Geometric discrepancy: 0.0424

The information below is about J4_1N78_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_95067.1

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

48

Unit IDs

1N77|1|C|A|507
1N77|1|C|U|508
1N77|1|C|C|509
1N77|1|C|G|510
*
1N77|1|C|C|525
1N77|1|C|G|526
1N77|1|C|C|527
*
1N77|1|C|G|543
1N77|1|C|A|544
1N77|1|C|A|545
1N77|1|C|A|546
1N77|1|C|C|548
1N77|1|C|G|549
*
1N77|1|C|C|565
1N77|1|C|U|566

Current chains

Chain C

tRNA(Glu)

Nearby chains

Chain A

Glutamyl-tRNA synthetase