J4_1N78_001

3D structure

PDB id

1N78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Thermus thermophilus glutamyl-tRNA synthetase complexed with tRNA(Glu) and glutamol-AMP.

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

AUCG*CGC*GAAACG*CU

Length

15 nucleotides

Bulged bases

1N78|1|C|U|508, 1N78|1|C|C|548

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_70449.27

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

53

Unit IDs

1N78|1|C|A|507
1N78|1|C|U|508
1N78|1|C|C|509
1N78|1|C|G|510
*
1N78|1|C|C|525
1N78|1|C|G|526
1N78|1|C|C|527
*
1N78|1|C|G|543
1N78|1|C|A|544
1N78|1|C|A|545
1N78|1|C|A|546
1N78|1|C|C|548
1N78|1|C|G|549
*
1N78|1|C|C|565
1N78|1|C|U|566

Current chains

Chain C

tRNA(Glu)

Nearby chains

Chain A

Glutamyl-tRNA synthetase