J4_1NJI_008

3D structure

PDB id

1NJI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of chloramphenicol bound to the 50S ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

1NJI|1|A|U|2012

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1NJI_008 not in the Motif Atlas

Homologous match to J4_4V9F_008

Geometric discrepancy: 0.0336

The information below is about J4_4V9F_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

1NJI|1|A|C|1889
1NJI|1|A|U|1890
1NJI|1|A|G|1891
*
1NJI|1|A|C|1946
1NJI|1|A|G|1947
*
1NJI|1|A|C|1965
1NJI|1|A|U|1966
1NJI|1|A|U|1967
1NJI|1|A|A|1968
1NJI|1|A|A|1969
1NJI|1|A|G|1970
1NJI|1|A|G|1971
1NJI|1|A|U|1972
1NJI|1|A|A|1973
1NJI|1|A|G|1974
*
1NJI|1|A|U|2008
1NJI|1|A|G|2009
1NJI|1|A|A|2010
1NJI|1|A|A|2011
1NJI|1|A|U|2012
1NJI|1|A|G|2013

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L37AE

Chain C

50S ribosomal protein L2P