J4_1NJM_011

3D structure

PDB id

1NJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CGAUAAA*UC*GCGC*GG

Length

15 nucleotides

Bulged bases

1NJM|1|0|G|1284, 1NJM|1|0|A|1285, 1NJM|1|0|U|1286, 1NJM|1|0|A|1288, 1NJM|1|0|G|1664

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1NJM_011 not in the Motif Atlas

Homologous match to J4_5J7L_021

Geometric discrepancy: 0.3061

The information below is about J4_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

1NJM|1|0|C|1283
1NJM|1|0|G|1284
1NJM|1|0|A|1285
1NJM|1|0|U|1286
1NJM|1|0|A|1287
1NJM|1|0|A|1288
1NJM|1|0|A|1289
*
1NJM|1|0|U|1307
1NJM|1|0|C|1308
*
1NJM|1|0|G|1662
1NJM|1|0|C|1663
1NJM|1|0|G|1664
1NJM|1|0|C|1665
*
1NJM|1|0|G|1992
1NJM|1|0|G|1993

Current chains

Chain 0

23S ribosomal RNA

Nearby chains