J4_1NJN_006

3D structure

PDB id

1NJN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GACUG*CACAG*UGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1NJN_006 not in the Motif Atlas

Homologous match to J4_4WF9_007

Geometric discrepancy: 0.1448

The information below is about J4_4WF9_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.6

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

1NJN|1|0|G|1763
1NJN|1|0|A|1764
1NJN|1|0|C|1765
1NJN|1|0|U|1766
1NJN|1|0|G|1767
*
1NJN|1|0|C|1779
1NJN|1|0|A|1780
1NJN|1|0|C|1781
1NJN|1|0|A|1782
1NJN|1|0|G|1783
*
1NJN|1|0|U|1819
1NJN|1|0|G|1820
1NJN|1|0|A|1821
1NJN|1|0|C|1822
*
1NJN|1|0|G|1958
1NJN|1|0|U|1959
1NJN|1|0|A|1960
1NJN|1|0|A|1961
1NJN|1|0|C|1962

Current chains

Chain 0

23S ribosomal RNA

Nearby chains